DisGeNET - a database of gene-disease associations

List of associated variants

Rheumatoid Arthritis, C0003873

Source: GWASDB ×

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs112630268	LINC00452	1.000	0.120	13	113919624	non coding transcript exon variant	-/G	ins			1
rs113652681		1.000	0.120	6	33339623	downstream gene variant	-/G;TG	ins			1
rs373094430		1.000	0.120	6	32622847	TF binding site variant	-/C	ins			1
rs201386475	HLA-DQB1	1.000	0.120	6	32668286	5 prime UTR variant	-/CA	delins			1
rs397897657	ICOSLG	1.000	0.120	21	44230126	intron variant	-/G	delins		1.7E-04	1
rs56323213	ICOSLG	1.000	0.120	21	44230126	intron variant	-/G	delins			1
rs574503121		1.000	0.120	6	33090337	downstream gene variant	-/ATTT	delins		4.3E-04	1
rs4420638	APOC1	0.708	0.520	19	44919689	downstream gene variant	A/G	snv		0.18	15
rs1800562	LOC108783645 ; HFE	0.435	0.880	6	26092913	missense variant	G/A	snv	3.3E-02	3.8E-02	14
rs2476601	AP4B1-AS1 ; PTPN22	0.498	0.800	1	113834946	missense variant	A/G	snv	0.93	0.93	13
rs204999		0.763	0.480	6	32142202	intergenic variant	A/G	snv		0.28	12
rs964184	ZPR1	0.716	0.440	11	116778201	3 prime UTR variant	G/C	snv		0.82	12
rs102275	TMEM258	0.827	0.320	11	61790331	non coding transcript exon variant	T/C	snv		0.47	10
rs12153855	TNXB	0.776	0.320	6	32107027	intron variant	T/C	snv		0.11	10
rs1799945	LOC108783645 ; HFE	0.452	0.760	6	26090951	missense variant	C/G;T	snv	0.11	0.10	10
rs2187668	LOC107986589 ; HLA-DQA2 ; HLA-DQA1	0.701	0.480	6	32638107	intron variant	C/T	snv		3.3E-03	10
rs12198173	TNXB	0.827	0.240	6	32059031	intron variant	G/A	snv		0.10	9
rs2516049	HLA-DRB1	0.742	0.400	6	32602623	intergenic variant	T/C	snv		0.27	9
rs599839	PSRC1	0.724	0.360	1	109279544	downstream gene variant	G/A;C	snv			9
rs9275572		0.724	0.360	6	32711222	upstream gene variant	A/G;T	snv			9
rs10484554	LOC112267902 ; HLA-B	0.807	0.200	6	31306778	intron variant	C/T	snv		0.12	8
rs13199524	TNXB	0.807	0.240	6	32098988	intron variant	C/T	snv		8.4E-02	8
rs185819	TNXB	0.851	0.200	6	32082290	missense variant	T/A;C;G	snv	8.2E-06; 0.58; 4.1E-06		8
rs2269426	TNXB	0.807	0.280	6	32108722	intron variant	G/A	snv		0.35	8
rs2395185	HLA-DRB9	0.724	0.360	6	32465390	intron variant	G/T	snv		0.29	8